SELECT 
  SQL_CALC_FOUND_ROWS products.product_id, 
  IF(
    shared_descr.product_id IS NOT NULL, 
    shared_descr.product, descr1.product
  ) as product, 
  companies.company as company_name, 
  popularity.total as popularity, 
  IF(
    shared_prices.product_id IS NOT NULL, 
    MIN(
      IF (
        shared_prices.percentage_discount = 0, 
        shared_prices.price, 
        shared_prices.price - (
          shared_prices.price * shared_prices.percentage_discount
        ) / 100
      )
    ), 
    MIN(
      IF (
        prices.percentage_discount = 0, 
        prices.price, 
        prices.price - (
          prices.price * prices.percentage_discount
        ) / 100
      )
    )
  ) as price, 
  products.product_type, 
  products.parent_product_id, 
  products.list_price as list_price, 
  100 - (
    (
      IF(
        bs_shared_prices.product_id IS NOT NULL, 
        MIN(
          IF (
            bs_shared_prices.percentage_discount = 0, 
            bs_shared_prices.price, 
            bs_shared_prices.price - (
              bs_shared_prices.price * bs_shared_prices.percentage_discount
            ) / 100
          )
        ), 
        MIN(
          IF (
            prices.percentage_discount = 0, 
            prices.price, 
            prices.price - (
              prices.price * prices.percentage_discount
            ) / 100
          )
        )
      ) * 100
    ) / products.list_price
  ) AS sales_discount, 
  IF(
    COUNT(
      IF(
        cscart_categories.company_id = products.company_id, 
        NULL, cscart_categories.company_id
      )
    ), 
    'Y', 
    'N'
  ) as is_shared_product 
FROM 
  cscart_products as products 
  LEFT JOIN cscart_product_features_values ON cscart_product_features_values.product_id = products.product_id 
  AND cscart_product_features_values.lang_code = 'ru' 
  LEFT JOIN cscart_product_features ON cscart_product_features_values.feature_id = cscart_product_features.feature_id 
  LEFT JOIN cscart_product_descriptions as descr1 ON descr1.product_id = products.product_id 
  AND descr1.lang_code = 'ru' 
  LEFT JOIN cscart_product_prices as prices ON prices.product_id = products.product_id 
  AND prices.lower_limit = 1 
  LEFT JOIN cscart_product_prices as prices_2 ON prices.product_id = prices_2.product_id 
  AND prices_2.lower_limit = 1 
  AND prices_2.price < prices.price 
  AND prices_2.usergroup_id IN (0, 0, 1) 
  LEFT JOIN cscart_companies AS companies ON companies.company_id = products.company_id 
  INNER JOIN cscart_products_categories as products_categories ON products_categories.product_id = products.product_id 
  INNER JOIN cscart_categories ON cscart_categories.category_id = products_categories.category_id 
  AND (
    cscart_categories.usergroup_ids = '' 
    OR FIND_IN_SET(
      0, cscart_categories.usergroup_ids
    ) 
    OR FIND_IN_SET(
      1, cscart_categories.usergroup_ids
    )
  ) 
  AND cscart_categories.status IN ('A', 'H') 
  AND cscart_categories.storefront_id IN (0, 1) 
  LEFT JOIN cscart_product_popularity as popularity ON popularity.product_id = products.product_id 
  LEFT JOIN cscart_ult_product_descriptions shared_descr ON shared_descr.product_id = products.product_id 
  AND shared_descr.company_id = 1 
  AND shared_descr.lang_code = 'ru' 
  LEFT JOIN cscart_ult_product_prices as shared_prices ON shared_prices.product_id = products.product_id 
  AND shared_prices.lower_limit = 1 
  AND shared_prices.usergroup_id IN (0, 0, 1) 
  AND shared_prices.company_id = 1 
  LEFT JOIN cscart_ult_product_prices as shared_prices_2 ON shared_prices.product_id = shared_prices_2.product_id 
  AND shared_prices_2.company_id = 1 
  AND shared_prices_2.lower_limit = 1 
  AND shared_prices_2.price < shared_prices.price 
  AND shared_prices_2.usergroup_id IN (0, 0, 1) 
  LEFT JOIN cscart_product_sales ON cscart_product_sales.product_id = products.product_id 
  AND cscart_product_sales.category_id = products_categories.category_id 
  LEFT JOIN cscart_ult_product_prices as bs_shared_prices ON bs_shared_prices.product_id = products.product_id 
  AND bs_shared_prices.lower_limit = 1 
  AND bs_shared_prices.usergroup_id IN (0, 0, 1) 
  AND bs_shared_prices.company_id = 1 
WHERE 
  1 
  AND companies.status IN ('A') 
  AND (
    products.amount > 0 
    OR products.tracking = 'D'
  ) 
  AND (
    products.usergroup_ids = '' 
    OR FIND_IN_SET(0, products.usergroup_ids) 
    OR FIND_IN_SET(1, products.usergroup_ids)
  ) 
  AND products.status IN ('A') 
  AND prices.usergroup_id IN (0, 0, 1) 
  AND prices_2.price IS NULL 
  AND shared_prices_2.price IS NULL 
  AND products.parent_product_id = 0 
GROUP BY 
  products.product_id 
HAVING 
  sales_discount > 0 
  AND price < list_price 
ORDER BY 
  product asc, 
  products.product_id ASC 
LIMIT 
  16, 16

Query time 0.08718

JSON explain

{
  "query_block": {
    "select_id": 1,
    "having_condition": "sales_discount > 0 and price < products.list_price",
    "filesort": {
      "sort_key": "if(NULL is not null,NULL,descr1.product), products.product_id",
      "temporary_table": {
        "table": {
          "table_name": "shared_descr",
          "access_type": "system",
          "possible_keys": ["PRIMARY", "product_id", "company_id"],
          "rows": 0,
          "filtered": 0,
          "const_row_not_found": true
        },
        "table": {
          "table_name": "prices",
          "access_type": "ALL",
          "possible_keys": [
            "usergroup",
            "product_id",
            "lower_limit",
            "usergroup_id"
          ],
          "rows": 1699,
          "filtered": 99.23484039,
          "attached_condition": "prices.lower_limit = 1 and prices.usergroup_id in (0,0,1)"
        },
        "table": {
          "table_name": "products",
          "access_type": "eq_ref",
          "possible_keys": ["PRIMARY", "status", "idx_parent_product_id"],
          "key": "PRIMARY",
          "key_length": "3",
          "used_key_parts": ["product_id"],
          "ref": ["noframes_angrybeaver.prices.product_id"],
          "rows": 1,
          "filtered": 96.7084198,
          "attached_condition": "products.parent_product_id = 0 and (products.amount > 0 or products.tracking = 'D') and (products.usergroup_ids = '' or find_in_set(0,products.usergroup_ids) or find_in_set(1,products.usergroup_ids)) and products.`status` = 'A'"
        },
        "table": {
          "table_name": "shared_prices",
          "access_type": "ref",
          "possible_keys": [
            "usergroup",
            "product_id",
            "company_id",
            "lower_limit",
            "usergroup_id"
          ],
          "key": "lower_limit",
          "key_length": "3",
          "used_key_parts": ["lower_limit"],
          "ref": ["const"],
          "rows": 1,
          "filtered": 100,
          "attached_condition": "trigcond(shared_prices.product_id = prices.product_id and shared_prices.company_id = 1 and shared_prices.usergroup_id in (0,0,1))"
        },
        "table": {
          "table_name": "shared_prices_2",
          "access_type": "ref",
          "possible_keys": [
            "usergroup",
            "product_id",
            "company_id",
            "lower_limit",
            "usergroup_id"
          ],
          "key": "lower_limit",
          "key_length": "3",
          "used_key_parts": ["lower_limit"],
          "ref": ["const"],
          "rows": 1,
          "filtered": 100,
          "attached_condition": "trigcond(shared_prices_2.price is null) and trigcond(shared_prices_2.product_id = shared_prices.product_id and shared_prices_2.company_id = 1 and shared_prices_2.price < shared_prices.price and shared_prices_2.usergroup_id in (0,0,1))",
          "not_exists": true
        },
        "table": {
          "table_name": "prices_2",
          "access_type": "ref",
          "possible_keys": [
            "usergroup",
            "product_id",
            "lower_limit",
            "usergroup_id"
          ],
          "key": "product_id",
          "key_length": "3",
          "used_key_parts": ["product_id"],
          "ref": ["noframes_angrybeaver.prices.product_id"],
          "rows": 1,
          "filtered": 99.23484039,
          "attached_condition": "trigcond(prices_2.price is null) and trigcond(prices_2.lower_limit = 1 and prices_2.price < prices.price and prices_2.usergroup_id in (0,0,1))",
          "not_exists": true
        },
        "table": {
          "table_name": "popularity",
          "access_type": "ref",
          "possible_keys": ["PRIMARY", "total"],
          "key": "total",
          "key_length": "3",
          "used_key_parts": ["product_id"],
          "ref": ["noframes_angrybeaver.prices.product_id"],
          "rows": 1,
          "filtered": 100,
          "using_index": true
        },
        "table": {
          "table_name": "products_categories",
          "access_type": "ref",
          "possible_keys": ["PRIMARY", "pt"],
          "key": "pt",
          "key_length": "3",
          "used_key_parts": ["product_id"],
          "ref": ["noframes_angrybeaver.prices.product_id"],
          "rows": 1,
          "filtered": 100
        },
        "table": {
          "table_name": "cscart_categories",
          "access_type": "eq_ref",
          "possible_keys": ["PRIMARY", "c_status", "p_category_id"],
          "key": "PRIMARY",
          "key_length": "3",
          "used_key_parts": ["category_id"],
          "ref": ["noframes_angrybeaver.products_categories.category_id"],
          "rows": 1,
          "filtered": 100,
          "attached_condition": "(cscart_categories.usergroup_ids = '' or find_in_set(0,cscart_categories.usergroup_ids) or find_in_set(1,cscart_categories.usergroup_ids)) and cscart_categories.`status` in ('A','H') and cscart_categories.storefront_id in (0,1)"
        },
        "table": {
          "table_name": "bs_shared_prices",
          "access_type": "ref",
          "possible_keys": [
            "usergroup",
            "product_id",
            "company_id",
            "lower_limit",
            "usergroup_id"
          ],
          "key": "lower_limit",
          "key_length": "3",
          "used_key_parts": ["lower_limit"],
          "ref": ["const"],
          "rows": 1,
          "filtered": 100,
          "attached_condition": "trigcond(bs_shared_prices.product_id = prices.product_id and bs_shared_prices.company_id = 1 and bs_shared_prices.usergroup_id in (0,0,1))"
        },
        "block-nl-join": {
          "table": {
            "table_name": "companies",
            "access_type": "ALL",
            "possible_keys": ["PRIMARY"],
            "rows": 2,
            "filtered": 100,
            "attached_condition": "companies.`status` = 'A'"
          },
          "buffer_type": "flat",
          "buffer_size": "2048Kb",
          "join_type": "BNL",
          "attached_condition": "companies.company_id = products.company_id"
        },
        "table": {
          "table_name": "cscart_product_features_values",
          "access_type": "ref",
          "possible_keys": [
            "lang_code",
            "product_id",
            "idx_product_feature_variant_id"
          ],
          "key": "idx_product_feature_variant_id",
          "key_length": "3",
          "used_key_parts": ["product_id"],
          "ref": ["noframes_angrybeaver.prices.product_id"],
          "rows": 5,
          "filtered": 56.88951111,
          "attached_condition": "trigcond(cscart_product_features_values.lang_code = 'ru')",
          "using_index": true
        },
        "table": {
          "table_name": "descr1",
          "access_type": "eq_ref",
          "possible_keys": ["PRIMARY", "product_id"],
          "key": "PRIMARY",
          "key_length": "9",
          "used_key_parts": ["product_id", "lang_code"],
          "ref": ["noframes_angrybeaver.prices.product_id", "const"],
          "rows": 1,
          "filtered": 100,
          "attached_condition": "trigcond(descr1.lang_code = 'ru')"
        }
      }
    }
  }
}