SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    12570, 12578, 12568, 12547, 12569, 12584, 
    12592, 12575, 12574, 12550, 12544, 
    12564, 12577, 12579, 12555, 12560, 
    12556, 12561, 12572, 12583, 12591, 
    12582, 12590, 12571, 12632, 12559, 
    12631, 10596, 10597, 10598, 10599, 
    10600, 10521, 10520, 10519, 10518, 
    10517, 10516, 10515, 10514, 10513, 
    10512, 10511, 10510, 10509, 10508, 
    10507, 10506, 10505, 10504, 10503, 
    10502, 10501, 10500, 10499, 10498, 
    10497, 9839, 12702, 9841, 9848, 9840, 
    9844, 9843
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00069

JSON explain

{
  "query_block": {
    "select_id": 1,
    "table": {
      "table_name": "cscart_product_prices",
      "access_type": "range",
      "possible_keys": ["usergroup", "product_id", "lower_limit", "usergroup_id"],
      "key": "product_id",
      "key_length": "3",
      "used_key_parts": ["product_id"],
      "rows": 64,
      "filtered": 99.23484039,
      "index_condition": "cscart_product_prices.product_id in (12570,12578,12568,12547,12569,12584,12592,12575,12574,12550,12544,12564,12577,12579,12555,12560,12556,12561,12572,12583,12591,12582,12590,12571,12632,12559,12631,10596,10597,10598,10599,10600,10521,10520,10519,10518,10517,10516,10515,10514,10513,10512,10511,10510,10509,10508,10507,10506,10505,10504,10503,10502,10501,10500,10499,10498,10497,9839,12702,9841,9848,9840,9844,9843)",
      "attached_condition": "cscart_product_prices.lower_limit = 1 and cscart_product_prices.usergroup_id in (0,1)"
    }
  }
}

Result

product_id price
9839 2150.58000000
9840 2150.58000000
9841 2150.58000000
9843 2150.58000000
9844 2150.58000000
9848 2150.58000000
10497 3599.16000000
10498 3599.16000000
10499 3599.16000000
10500 3599.16000000
10501 3599.16000000
10502 4033.73000000
10503 4033.73000000
10504 4033.73000000
10505 4033.73000000
10506 4033.73000000
10507 4033.73000000
10508 4033.73000000
10509 4189.73000000
10510 4189.73000000
10511 4189.73000000
10512 4189.73000000
10513 4189.73000000
10514 4189.73000000
10515 4189.73000000
10516 4189.73000000
10517 4189.73000000
10518 3365.16000000
10519 3365.16000000
10520 3365.16000000
10521 3365.16000000
10596 3365.16000000
10597 3365.16000000
10598 3365.16000000
10599 3365.16000000
10600 3365.16000000
12544 41728.72000000
12547 67629.15000000
12550 47964.00000000
12555 41728.72000000
12556 41728.72000000
12559 48683.54000000
12560 67629.15000000
12561 67629.15000000
12564 67629.15000000
12568 10552.12000000
12569 10552.12000000
12570 11031.68000000
12571 67629.15000000
12572 42208.28000000
12574 78181.27000000
12575 47964.00000000
12577 42208.28000000
12578 36540.00000000
12579 10072.36000000
12582 41728.72000000
12583 41728.72000000
12584 41160.00000000
12590 67629.15000000
12591 67629.15000000
12592 64680.00000000
12631 41728.72000000
12632 67629.15000000
12702 2150.58000000