SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    15742, 15743, 15745, 15746, 15744, 12632, 
    12633, 10179, 10180, 10523, 10073, 
    10077, 10076, 10086, 10085, 10084, 
    10083, 10082, 10081, 10080
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00041

JSON explain

{
  "query_block": {
    "select_id": 1,
    "table": {
      "table_name": "cscart_product_prices",
      "access_type": "range",
      "possible_keys": ["usergroup", "product_id", "lower_limit", "usergroup_id"],
      "key": "product_id",
      "key_length": "3",
      "used_key_parts": ["product_id"],
      "rows": 20,
      "filtered": 99.23484039,
      "index_condition": "cscart_product_prices.product_id in (15742,15743,15745,15746,15744,12632,12633,10179,10180,10523,10073,10077,10076,10086,10085,10084,10083,10082,10081,10080)",
      "attached_condition": "cscart_product_prices.lower_limit = 1 and cscart_product_prices.usergroup_id in (0,1)"
    }
  }
}

Result

product_id price
10073 1660.30000000
10076 1660.30000000
10077 1660.30000000
10080 1660.30000000
10081 1660.30000000
10082 1660.30000000
10083 1660.30000000
10084 1660.30000000
10085 1660.30000000
10086 1660.30000000
10179 1660.30000000
10180 1660.30000000
10523 1660.30000000
12632 67629.15000000
12633 67629.15000000
15742 3955.73000000
15743 3955.73000000
15744 3000.00000000
15745 3955.73000000
15746 3955.73000000